Variant report

Variant	rs28469577
Chromosome Location	chr8:102676942-102676943
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102676339..102678674-chr8:102680968..102682901,3	MCF-7	breast:
2	chr8:102673349..102676352-chr8:102676629..102679510,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10093301	0.83[EUR][1000 genomes]
rs10099482	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10099649	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10101770	0.85[EUR][1000 genomes]
rs10106317	0.85[EUR][1000 genomes]
rs10111577	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10111904	0.83[EUR][1000 genomes]
rs16868132	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16868133	0.83[EUR][1000 genomes]
rs16868134	0.83[EUR][1000 genomes]
rs16868139	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16868159	0.81[EUR][1000 genomes]
rs16868178	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16868196	0.84[EUR][1000 genomes]
rs16868197	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2275994	0.80[EUR][1000 genomes]
rs3939935	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4734564	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62517442	0.83[ASN][1000 genomes]
rs6996060	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102651400-102681200	Weak transcription	Stomach Mucosa	stomach
2	chr8:102659200-102679400	Weak transcription	HMEC	breast
3	chr8:102661200-102678600	Weak transcription	Fetal Stomach	stomach
4	chr8:102661600-102678800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:102661800-102678600	Weak transcription	Colonic Mucosa	Colon
6	chr8:102664400-102678600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:102664800-102677000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:102667600-102682800	Weak transcription	Aorta	Aorta
9	chr8:102669200-102677000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr8:102670600-102677600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:102670600-102680600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr8:102670800-102677400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:102670800-102677400	Weak transcription	NHEK	skin
14	chr8:102670800-102678800	Weak transcription	Esophagus	oesophagus
15	chr8:102670800-102699000	Weak transcription	Right Ventricle	heart
16	chr8:102671800-102678600	Weak transcription	Lung	lung
17	chr8:102672800-102682400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:102676200-102677000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:102676200-102679800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:102676200-102680600	Strong transcription	Placenta	Placenta
21	chr8:102676200-102682200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr8:102676400-102677400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:102676400-102679600	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:102676400-102680400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr8:102676400-102681200	Strong transcription	Fetal Intestine Large	intestine
26	chr8:102676400-102681200	Strong transcription	Placenta Amnion	Placenta Amnion
27	chr8:102676600-102677400	Enhancers	Adipose Nuclei	Adipose
28	chr8:102676600-102678800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:102676600-102680200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr8:102676600-102680600	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr8:102676600-102681200	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr8:102676600-102681400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr8:102676600-102682200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr8:102676800-102677400	Strong transcription	Duodenum Mucosa	Duodenum
35	chr8:102676800-102679800	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr8:102676800-102680000	Strong transcription	Pancreas	Pancrea
37	chr8:102676800-102681200	Strong transcription	Gastric	stomach
38	chr8:102676800-102681400	Strong transcription	Rectal Mucosa Donor 29	rectum

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