Variant report

Variant	rs10090082
Chromosome Location	chr8:113216159-113216160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10085914	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10113376	0.84[EUR][1000 genomes]
rs10113732	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10216611	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12334550	1.00[CEU][hapmap]
rs12335058	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17629268	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17638176	0.82[CEU][hapmap]
rs28369252	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28468973	0.84[EUR][1000 genomes]
rs28507892	0.84[EUR][1000 genomes]
rs28588518	0.84[EUR][1000 genomes]
rs28620868	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28637624	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28641175	0.84[EUR][1000 genomes]
rs28684567	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28705028	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28711277	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv891321	chr8:112978128-113229425	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891322	chr8:112978128-113267916	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113214800-113217400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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