Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10085914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10090082	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10105640	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10113376	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10113732	1.00[CEU][hapmap];1.00[MKK][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12334550	1.00[CEU][hapmap];1.00[MKK][hapmap]
rs12335058	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17560620	1.00[YRI][hapmap]
rs17629268	1.00[CEU][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17638176	0.82[CEU][hapmap];1.00[MKK][hapmap]
rs28369252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28468973	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28507892	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28588518	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28613001	0.88[AMR][1000 genomes]
rs28620868	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28637624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28641175	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28684567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28705028	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28711277	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113278000-113281800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:113281200-113282400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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