Variant report

Variant	rs10090881
Chromosome Location	chr8:91625997-91625998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91621323..91626406-chr8:91655507..91659501,5	MCF-7	breast:
2	chr8:91625597..91628438-chr8:91655744..91658376,3	MCF-7	breast:
3	chr8:91619777..91622363-chr8:91625498..91627385,2	MCF-7	breast:
4	chr8:91623473..91626403-chr8:91632534..91634782,2	MCF-7	breast:
5	chr8:91601893..91604023-chr8:91625037..91626925,2	MCF-7	breast:
6	chr8:91625975..91628340-chr8:91641388..91642940,2	MCF-7	breast:
7	chr8:91623824..91626292-chr8:91657126..91658756,2	K562	blood:
8	chr8:91625970..91628020-chr8:91651909..91654017,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000180694	Chromatin interaction
ENSG00000246792	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10046624	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096165	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12334579	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16905037	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2003429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2008666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28442149	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57004488	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58805384	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59515830	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60822939	0.82[AMR][1000 genomes]
rs6471203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7006684	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692317	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692455	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7817864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7818792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823272	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7824028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7836315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7846326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9297883	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827745	chr8:91623737-91660193	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91606600-91627600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:91617000-91628600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:91617400-91628600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:91618200-91631600	Weak transcription	Stomach Mucosa	stomach
5	chr8:91619000-91628600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:91620000-91627200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:91620000-91630000	Weak transcription	HSMMtube	muscle
8	chr8:91620400-91628400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:91620400-91628400	Weak transcription	Brain Hippocampus Middle	brain
10	chr8:91620400-91630800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:91620400-91652200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:91621000-91627200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr8:91621000-91628600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:91621000-91628800	Weak transcription	A549	lung
15	chr8:91621200-91628600	Weak transcription	Brain Anterior Caudate	brain
16	chr8:91621400-91627400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr8:91621800-91628400	Weak transcription	Adipose Nuclei	Adipose
18	chr8:91621800-91628600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:91621800-91628600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:91621800-91628600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:91622000-91628400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:91622000-91628800	Weak transcription	Liver	Liver
23	chr8:91622400-91628000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr8:91622400-91628600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:91622400-91634600	Weak transcription	NHEK	skin
26	chr8:91622800-91628200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr8:91622800-91628600	Weak transcription	Lung	lung
28	chr8:91622800-91628800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:91622800-91630800	Weak transcription	K562	blood
30	chr8:91623000-91628200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr8:91623200-91628600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr8:91624000-91628800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:91624000-91654800	Weak transcription	Pancreas	Pancrea
34	chr8:91624200-91627000	Weak transcription	GM12878-XiMat	blood
35	chr8:91624200-91628400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr8:91624200-91628600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:91624200-91652200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr8:91624400-91644800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr8:91624600-91635000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr8:91625400-91626000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr8:91625400-91626200	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr8:91625600-91626000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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