Variant report

Variant	rs12334579
Chromosome Location	chr8:91622155-91622156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:91622086-91622390	ProgFib	skin:	n/a	n/a
2	POLR2A	chr8:91620458-91624767	MCF-7	breast:	n/a	n/a
3	PML	chr8:91621194-91622174	MCF-7	breast:	n/a	n/a
4	POLR2A	chr8:91622045-91622264	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91614062..91616236-chr8:91620132..91623059,2	K562	blood:
2	chr8:91621323..91626406-chr8:91655507..91659501,5	MCF-7	breast:
3	chr8:91621172..91624460-chr8:91656090..91658509,4	MCF-7	breast:
4	chr8:91619777..91622363-chr8:91625498..91627385,2	MCF-7	breast:
5	chr8:90996675..90999538-chr8:91621652..91623385,2	MCF-7	breast:
6	chr8:91613334..91617171-chr8:91619742..91623247,5	MCF-7	breast:
7	chr8:91614062..91617151-chr8:91620132..91623059,3	K562	blood:

No data

Variant related genes	Relation type
LINC01030	TF binding region
ENSG00000104320	Chromatin interaction
ENSG00000180694	Chromatin interaction
ENSG00000246792	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10046624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10090881	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096165	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107245	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904993	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904995	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16905037	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2003429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2008666	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28442149	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57004488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58805384	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59515830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60822939	0.82[AMR][1000 genomes]
rs6471203	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7006684	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692313	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692317	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692455	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7817864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7818792	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823272	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7824028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7836315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7846326	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9297883	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91606600-91627600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:91617000-91628600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:91617400-91628600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:91618200-91631600	Weak transcription	Stomach Mucosa	stomach
5	chr8:91619000-91628600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:91620000-91623800	Weak transcription	Pancreas	Pancrea
7	chr8:91620000-91627200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:91620000-91630000	Weak transcription	HSMMtube	muscle
9	chr8:91620400-91628400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:91620400-91628400	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:91620400-91630800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:91620400-91652200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr8:91621000-91627200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:91621000-91628600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:91621000-91628800	Weak transcription	A549	lung
16	chr8:91621200-91628600	Weak transcription	Brain Anterior Caudate	brain
17	chr8:91621400-91622200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:91621400-91627400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr8:91621600-91622400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr8:91621600-91622400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:91621600-91624000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr8:91621600-91624200	ZNF genes & repeats	GM12878-XiMat	blood
23	chr8:91621800-91622600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:91621800-91623000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr8:91621800-91623200	Strong transcription	H9 Cell Line	embryonic stem cell
26	chr8:91621800-91623400	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:91621800-91624000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr8:91621800-91628400	Weak transcription	Adipose Nuclei	Adipose
29	chr8:91621800-91628600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr8:91621800-91628600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:91621800-91628600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr8:91622000-91622800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:91622000-91624200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:91622000-91628400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr8:91622000-91628800	Weak transcription	Liver	Liver

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