Variant report

Variant	rs59515830
Chromosome Location	chr8:91619546-91619547
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:91617555-91620402	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25011011..25013014-chr8:91618682..91620639,2	MCF-7	breast:
2	chr16:74155742..74156704-chr8:91618988..91619904,2	MCF-7	breast:

Variant related genes	Relation type
LINC01030	TF binding region
ENSG00000107863	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10046624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10090881	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096165	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107245	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12334579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904993	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904995	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16905037	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2003429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2008666	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28442149	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57004488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58805384	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60822939	0.82[AMR][1000 genomes]
rs6471203	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7006684	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692313	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692317	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692455	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7817864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7818792	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823272	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7824028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7836315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7846326	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9297883	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91594600-91621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:91606600-91621800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:91606600-91627600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:91614400-91621200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:91617000-91628600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:91617400-91621600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:91617400-91628600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:91618200-91631600	Weak transcription	Stomach Mucosa	stomach
9	chr8:91619000-91628600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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