Variant report

Variant	rs10091224
Chromosome Location	chr8:125970660-125970661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10093690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10101996	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28417712	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28694080	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7018326	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7018438	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9297703	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9297704	1.00[EUR][1000 genomes]
rs9886513	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125968000-125971600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr8:125968200-125970800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:125968400-125970800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:125969000-125974000	Weak transcription	Fetal Intestine Large	intestine
5	chr8:125969800-125974000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:125969800-125985000	Weak transcription	Right Atrium	heart
7	chr8:125970000-125973600	Weak transcription	K562	blood
8	chr8:125970600-125974600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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