Variant report

Variant	rs7018326
Chromosome Location	chr8:125977492-125977493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000170873	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000255491	Chromatin interaction
ENSG00000147684	Chromatin interaction
ENSG00000253513	Chromatin interaction
ENSG00000104549	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10091224	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10093690	0.97[EUR][1000 genomes]
rs10101996	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2382999	0.85[CEU][hapmap]
rs28417712	0.97[EUR][1000 genomes]
rs28694080	0.95[EUR][1000 genomes]
rs7018438	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9297703	0.95[EUR][1000 genomes]
rs9297704	0.97[EUR][1000 genomes]
rs9886513	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125969800-125985000	Weak transcription	Right Atrium	heart
2	chr8:125974000-125977600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:125975200-125979400	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:125975800-125977600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr8:125976200-125979800	Enhancers	Placenta	Placenta
6	chr8:125976800-125978000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:125977000-125978800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:125977400-125977800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:125977400-125978600	Weak transcription	HepG2	liver
10	chr8:125977400-125979400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr8:125977400-125979400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:125977400-125982000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:125977400-125985400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links