Variant report

Variant	rs10101996
Chromosome Location	chr8:125978638-125978639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10091224	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10093690	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28417712	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28694080	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7018326	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7018438	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9297703	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9297704	0.97[EUR][1000 genomes]
rs9886513	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125969800-125985000	Weak transcription	Right Atrium	heart
2	chr8:125975200-125979400	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:125976200-125979800	Enhancers	Placenta	Placenta
4	chr8:125977000-125978800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:125977400-125979400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:125977400-125979400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:125977400-125982000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:125977400-125985400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:125977600-125985200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:125977600-125985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:125977800-125979400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:125978000-125979400	Weak transcription	Fetal Heart	heart
13	chr8:125978600-125979400	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links