Variant report

Variant	rs10091548
Chromosome Location	chr8:107073488-107073489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10094724	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10102842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109805	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441505	1.00[ASW][hapmap]
rs28642672	1.00[AMR][1000 genomes]
rs6985781	1.00[ASW][hapmap];1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10091548	C2orf3	trans	lymphoblastoid	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107068000-107073600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:107072400-107074800	Enhancers	NHDF-Ad	bronchial
3	chr8:107072600-107073800	Enhancers	HUVEC	blood vessel
4	chr8:107072600-107073800	Enhancers	NHLF	lung
5	chr8:107072600-107074000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:107072600-107074400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:107072800-107073600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:107072800-107073800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:107073000-107074000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:107073000-107074600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:107073200-107073600	Enhancers	A549	lung
12	chr8:107073200-107073600	Enhancers	Hela-S3	cervix
13	chr8:107073200-107074200	Enhancers	NH-A	brain
14	chr8:107073200-107074200	Enhancers	Osteobl	bone
15	chr8:107073400-107074000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:107073400-107074000	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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