Variant report

Variant	rs10441505
Chromosome Location	chr8:107152005-107152006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10086091	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10091548	1.00[ASW][hapmap]
rs10092009	0.97[AFR][1000 genomes]
rs10108157	0.84[AFR][1000 genomes]
rs10109501	0.90[AFR][1000 genomes]
rs10111082	0.94[AFR][1000 genomes]
rs10112588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441506	0.81[AFR][1000 genomes]
rs10481105	0.85[AFR][1000 genomes]
rs28389475	0.81[AFR][1000 genomes]
rs28391434	0.81[AFR][1000 genomes]
rs28532677	0.81[AFR][1000 genomes]
rs28591678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28642672	0.84[AFR][1000 genomes]
rs28765202	0.81[AFR][1000 genomes]
rs28853955	0.90[AFR][1000 genomes]
rs28864755	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7000344	0.81[AFR][1000 genomes]
rs978910	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10441505	METRNL	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107152000-107152400	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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