Variant report

Variant	rs28391434
Chromosome Location	chr8:107134134-107134135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10088646	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10091476	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10099787	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10112588	0.81[AFR][1000 genomes]
rs10441505	0.81[AFR][1000 genomes]
rs28389475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28532677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28591678	0.81[AFR][1000 genomes]
rs28599631	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28765202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28839577	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6995166	1.00[AMR][1000 genomes]
rs6996183	1.00[AMR][1000 genomes]
rs6999477	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7000344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7841359	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7841573	1.00[AMR][1000 genomes]
rs9656871	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv967539	chr8:107123687-107134580	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107123600-107140400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107130000-107140000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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