Variant report

Variant	rs10099787
Chromosome Location	chr8:107140465-107140466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10088646	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10091476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441505	0.85[YRI][hapmap]
rs28389475	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391434	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28532677	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28599631	1.00[AMR][1000 genomes]
rs28765202	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28839577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6995166	1.00[AMR][1000 genomes]
rs6996183	1.00[AMR][1000 genomes]
rs6999477	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7000344	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7841359	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7841573	1.00[AMR][1000 genomes]
rs9656870	0.82[AFR][1000 genomes]
rs9656871	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107135600-107141200	Weak transcription	Osteobl	bone
2	chr8:107136800-107141400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:107138000-107140600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:107138400-107141600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:107139000-107140800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:107139200-107141200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:107139200-107141200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:107139400-107140600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:107139400-107140600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:107140000-107140600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:107140000-107140600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr8:107140000-107141600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr8:107140000-107142000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr8:107140200-107141000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:107140400-107141200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:107140400-107141400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr8:107140400-107143600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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