Variant report
| Variant | rs28532677 |
|---|---|
| Chromosome Location | chr8:107133453-107133454 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:107131917..107134128-chr8:107281997..107284179,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254615 | Chromatin interaction |
| ENSG00000164830 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10088646 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10091476 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10099787 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10112588 | 0.81[AFR][1000 genomes] |
| rs10441505 | 0.81[AFR][1000 genomes] |
| rs28389475 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28391434 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28591678 | 0.81[AFR][1000 genomes] |
| rs28599631 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28765202 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28839577 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6995166 | 1.00[AMR][1000 genomes] |
| rs6996183 | 1.00[AMR][1000 genomes] |
| rs6999477 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7000344 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7841359 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7841573 | 1.00[AMR][1000 genomes] |
| rs9656871 | 0.92[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv891262 | chr8:107076421-107209378 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv967539 | chr8:107123687-107134580 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:107123600-107140400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr8:107130000-107140000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
