Variant report

Variant	rs28591678
Chromosome Location	chr8:107162195-107162196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10086091	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10092009	0.97[AFR][1000 genomes]
rs10108157	0.84[AFR][1000 genomes]
rs10109501	0.90[AFR][1000 genomes]
rs10111082	0.94[AFR][1000 genomes]
rs10112588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441506	0.81[AFR][1000 genomes]
rs10481105	0.85[AFR][1000 genomes]
rs28389475	0.81[AFR][1000 genomes]
rs28391434	0.81[AFR][1000 genomes]
rs28532677	0.81[AFR][1000 genomes]
rs28642672	0.84[AFR][1000 genomes]
rs28765202	0.81[AFR][1000 genomes]
rs28853955	0.90[AFR][1000 genomes]
rs28864755	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7000344	0.81[AFR][1000 genomes]
rs978910	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107159200-107162600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:107159400-107162600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:107161000-107162400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:107161800-107162400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:107161800-107163200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:107162000-107162400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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