Variant report

Variant	rs10092009
Chromosome Location	chr8:107108697-107108698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10086091	0.91[AFR][1000 genomes]
rs10100211	0.80[AFR][1000 genomes]
rs10108157	0.87[AFR][1000 genomes]
rs10109501	0.93[AFR][1000 genomes]
rs10111082	0.97[AFR][1000 genomes]
rs10112588	0.97[AFR][1000 genomes]
rs10441505	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs10481105	0.88[AFR][1000 genomes]
rs28591678	0.97[AFR][1000 genomes]
rs28642672	0.87[AFR][1000 genomes]
rs28853955	0.93[AFR][1000 genomes]
rs28864755	0.90[AFR][1000 genomes]
rs978910	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107105000-107108800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:107107200-107108800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:107107200-107108800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:107107200-107109000	Enhancers	Brain Anterior Caudate	brain
5	chr8:107107400-107108800	Weak transcription	Brain Angular Gyrus	brain
6	chr8:107107600-107108800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr8:107107800-107108800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:107107800-107109000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:107107800-107109400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:107107800-107109600	Enhancers	Aorta	Aorta
11	chr8:107108000-107108800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:107108000-107108800	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:107108200-107109000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:107108400-107108800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr8:107108400-107108800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:107108400-107109000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:107108400-107109000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr8:107108400-107109000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr8:107108400-107109000	Enhancers	Osteobl	bone
20	chr8:107108400-107109200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:107108600-107108800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr8:107108600-107108800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:107108600-107108800	Enhancers	Brain Substantia Nigra	brain
24	chr8:107108600-107108800	Enhancers	Right Atrium	heart
25	chr8:107108600-107109000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:107108600-107109000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr8:107108600-107109200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr8:107108600-107109200	Enhancers	Colon Smooth Muscle	Colon
29	chr8:107108600-107110400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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