Variant report

Variant	rs10109501
Chromosome Location	chr8:107188650-107188651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10086091	0.85[AFR][1000 genomes]
rs10091548	1.00[ASW][hapmap]
rs10092009	0.93[AFR][1000 genomes]
rs10100211	0.87[AFR][1000 genomes]
rs10108157	0.80[AFR][1000 genomes]
rs10111082	0.90[AFR][1000 genomes]
rs10112588	0.90[AFR][1000 genomes]
rs10441505	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10481105	0.94[AFR][1000 genomes]
rs13439045	0.81[AFR][1000 genomes]
rs28591678	0.90[AFR][1000 genomes]
rs28642672	0.80[AFR][1000 genomes]
rs28853955	1.00[AFR][1000 genomes]
rs28864755	0.84[AFR][1000 genomes]
rs73698641	0.83[AFR][1000 genomes]
rs978910	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10109501	METRNL	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107183200-107193400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:107187400-107188800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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