Variant report
| Variant | rs6985781 |
|---|---|
| Chromosome Location | chr8:106945784-106945785 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr8:106945110-106945876 | SK-N-SH | brain: | n/a | chr8:106945455-106945474 |
| 2 | CTCF | chr8:106945078-106945836 | SK-N-SH | brain: | n/a | chr8:106945454-106945472 chr8:106945456-106945477 |
| 3 | RAD21 | chr8:106945097-106945873 | HCT-116 | colon: | n/a | chr8:106945455-106945474 |
| 4 | CTCF | chr8:106945049-106945897 | A549 | lung: | n/a | chr8:106945454-106945472 chr8:106945456-106945477 |
| 5 | BACH1 | chr8:106945692-106945856 | H1-hESC | embryonic stem cell: | n/a | n/a |
| No data |
(count:7 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:106944912..106945818-chr8:107773624..107774542,2 | MCF-7 | breast: | |
| 2 | chr8:106939707..106941922-chr8:106944290..106946976,2 | K562 | blood: | |
| 3 | chr8:106945333..106945909-chr8:108791751..108792331,2 | MCF-7 | breast: | |
| 4 | chr8:106945168..106945969-chr8:107205051..107205557,2 | K562 | blood: | |
| 5 | chr8:106945057..106945974-chr8:107604226..107604770,2 | MCF-7 | breast: | |
| 6 | chr8:106944949..106945870-chr8:107534079..107534638,3 | MCF-7 | breast: | |
| 7 | chr8:106945007..106945989-chr8:107093330..107093872,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000201627 | TF binding region |
| ENSG00000201627 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10091548 | 1.00[ASW][hapmap];1.00[MKK][hapmap] |
| rs10097774 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10099011 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10107212 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12334892 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28787994 | 1.00[AMR][1000 genomes] |
| rs55641851 | 1.00[AMR][1000 genomes] |
| rs58311707 | 1.00[AMR][1000 genomes] |
| rs59137754 | 1.00[AMR][1000 genomes] |
| rs73698351 | 1.00[AMR][1000 genomes] |
| rs73698363 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700536 | 1.00[AMR][1000 genomes] |
| rs73700551 | 1.00[AMR][1000 genomes] |
| rs9297374 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9297375 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9987145 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1019518 | chr8:106923469-106959075 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv515580 | chr8:106925995-106956427 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv3324625 | chr8:106926825-106951186 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:106945600-106946000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
