Variant report

Variant	rs28787994
Chromosome Location	chr8:106888289-106888290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10097774	1.00[AMR][1000 genomes]
rs10099011	1.00[AMR][1000 genomes]
rs10107212	1.00[AMR][1000 genomes]
rs12334892	1.00[AMR][1000 genomes]
rs55641851	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58311707	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59137754	1.00[AMR][1000 genomes]
rs6985781	1.00[AMR][1000 genomes]
rs73698351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698363	1.00[AMR][1000 genomes]
rs73700536	1.00[AMR][1000 genomes]
rs73700551	1.00[AMR][1000 genomes]
rs9297374	1.00[AMR][1000 genomes]
rs9297375	1.00[AMR][1000 genomes]
rs9987145	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv891261	chr8:106880649-106932634	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106888200-106888600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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