Variant report

Variant	rs73700551
Chromosome Location	chr8:107068049-107068050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10097774	1.00[AMR][1000 genomes]
rs10099011	1.00[AMR][1000 genomes]
rs10107212	1.00[AMR][1000 genomes]
rs12334892	1.00[AMR][1000 genomes]
rs28787994	1.00[AMR][1000 genomes]
rs58311707	1.00[AMR][1000 genomes]
rs59137754	1.00[AMR][1000 genomes]
rs61282617	1.00[AMR][1000 genomes]
rs6985781	1.00[AMR][1000 genomes]
rs73698351	1.00[AMR][1000 genomes]
rs73698363	1.00[AMR][1000 genomes]
rs73698623	1.00[AMR][1000 genomes]
rs73698629	1.00[AMR][1000 genomes]
rs73698632	1.00[AMR][1000 genomes]
rs73698667	1.00[AMR][1000 genomes]
rs73700536	1.00[AMR][1000 genomes]
rs9297374	1.00[AMR][1000 genomes]
rs9297375	1.00[AMR][1000 genomes]
rs9987145	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107052200-107069200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107059200-107072000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:107060600-107070800	Weak transcription	A549	lung
4	chr8:107066800-107068200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:107067000-107069000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:107067200-107068200	Enhancers	Osteobl	bone
7	chr8:107067400-107068200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:107067400-107068200	Enhancers	Brain Germinal Matrix	brain
9	chr8:107067400-107068200	Enhancers	NH-A	brain
10	chr8:107067400-107070800	Weak transcription	Hela-S3	cervix
11	chr8:107067600-107068200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr8:107067600-107068200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:107067600-107068200	Enhancers	Fetal Stomach	stomach
14	chr8:107067600-107070600	Weak transcription	NHLF	lung
15	chr8:107067600-107071200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:107067800-107068200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:107067800-107070600	Weak transcription	K562	blood
18	chr8:107067800-107071200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:107067800-107071800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr8:107068000-107068400	Enhancers	Fetal Kidney	kidney
21	chr8:107068000-107071000	Weak transcription	NHDF-Ad	bronchial
22	chr8:107068000-107073600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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