Variant report
| Variant | rs9987145 |
|---|---|
| Chromosome Location | chr8:106989963-106989964 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000251003 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10097774 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10099011 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10107212 | 1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12334892 | 1.00[AMR][1000 genomes] |
| rs28787994 | 1.00[AMR][1000 genomes] |
| rs55641851 | 1.00[AMR][1000 genomes] |
| rs58311707 | 1.00[AMR][1000 genomes] |
| rs59137754 | 1.00[AMR][1000 genomes] |
| rs61282617 | 1.00[AMR][1000 genomes] |
| rs6985781 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73698351 | 1.00[AMR][1000 genomes] |
| rs73698363 | 1.00[AMR][1000 genomes] |
| rs73698623 | 1.00[AMR][1000 genomes] |
| rs73698629 | 1.00[AMR][1000 genomes] |
| rs73698632 | 1.00[AMR][1000 genomes] |
| rs73700536 | 1.00[AMR][1000 genomes] |
| rs73700551 | 1.00[AMR][1000 genomes] |
| rs9297374 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9297375 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:106989200-106990200 | Weak transcription | Pancreas | Pancrea |
