Variant report

Variant	rs10092346
Chromosome Location	chr8:42639293-42639294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:42590898..42593022-chr8:42638954..42640483,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10087172	0.87[CEU][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10105699	0.96[ASN][1000 genomes]
rs10107450	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10108797	0.91[AMR][1000 genomes]
rs10109040	0.87[CEU][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10109429	0.88[CHD][hapmap];0.84[JPT][hapmap]
rs10110332	0.83[AMR][1000 genomes]
rs1072003	0.87[CEU][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes]
rs11986893	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11995030	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1625050	0.86[CHB][hapmap]
rs1960346	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2082591	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2117225	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2196128	0.94[CEU][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2217732	0.82[CEU][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2304297	0.92[ASW][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];0.87[MKK][hapmap];0.92[YRI][hapmap]
rs28501554	0.91[AMR][1000 genomes]
rs28784665	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28826992	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34996273	0.87[ASN][1000 genomes]
rs4509313	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4567031	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4737068	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4737071	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56395510	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6474418	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6474420	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6984252	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6999449	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000412	0.90[AMR][1000 genomes]
rs7001753	0.90[AMR][1000 genomes]
rs7003968	0.98[ASN][1000 genomes]
rs7004108	0.81[AFR][1000 genomes]
rs7005126	0.86[ASN][1000 genomes]
rs7015935	0.87[AMR][1000 genomes]
rs773069	0.86[CHB][hapmap]
rs773070	0.84[CHB][hapmap]
rs773072	0.86[CHB][hapmap]
rs7812298	0.82[CEU][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs7824614	0.81[AFR][1000 genomes]
rs7825261	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7826201	0.98[ASN][1000 genomes]
rs7831096	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7835435	0.86[CHB][hapmap]
rs7841834	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7845365	1.00[ASN][1000 genomes]
rs7845663	0.87[CEU][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap]
rs892413	1.00[ASW][hapmap];0.87[CEU][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];0.89[LWK][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv428516	chr8:42577171-42731235	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv890846	chr8:42625663-43240123	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42638600-42640000	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:42638800-42639600	Enhancers	GM12878-XiMat	blood
3	chr8:42638800-42639800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:42638800-42640000	Enhancers	Primary B cells from cord blood	blood
5	chr8:42639000-42639400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:42639000-42639400	Enhancers	Thymus	Thymus
7	chr8:42639000-42639600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr8:42639000-42639600	Enhancers	Fetal Thymus	thymus
9	chr8:42639000-42639600	Enhancers	K562	blood
10	chr8:42639000-42639600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr8:42639000-42639800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:42639200-42639600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr8:42639200-42639600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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