Variant report

Variant	rs7841834
Chromosome Location	chr8:42652714-42652715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr8:42652129-42652860	GM12878	blood:	n/a	chr8:42652267-42652282 chr8:42652308-42652323
2	NFYB	chr8:42652131-42652815	K562	blood:	n/a	chr8:42652267-42652282 chr8:42652308-42652323

Variant related genes	Relation type
CHRNA6	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10087172	0.83[AMR][1000 genomes]
rs10092346	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10105699	0.90[ASN][1000 genomes]
rs10107450	0.90[AMR][1000 genomes]
rs10108797	0.82[AMR][1000 genomes]
rs10109040	0.83[AMR][1000 genomes]
rs10110332	0.84[AMR][1000 genomes]
rs1072003	0.82[AMR][1000 genomes]
rs11986893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995030	0.83[AMR][1000 genomes]
rs1960346	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2082591	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2117225	0.83[AMR][1000 genomes]
rs2196128	0.82[AMR][1000 genomes]
rs2217732	0.81[AMR][1000 genomes]
rs28501554	0.82[AMR][1000 genomes]
rs28784665	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28826992	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34996273	0.95[ASN][1000 genomes]
rs4509313	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4567031	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737068	0.83[AMR][1000 genomes]
rs4737071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56395510	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6474418	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6474420	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6984252	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999449	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7000412	0.81[AMR][1000 genomes]
rs7001753	0.81[AMR][1000 genomes]
rs7003968	0.92[ASN][1000 genomes]
rs7005126	0.94[ASN][1000 genomes]
rs7825261	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7826201	0.89[ASN][1000 genomes]
rs7831096	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845365	0.92[ASN][1000 genomes]
rs892413	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv428516	chr8:42577171-42731235	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv890846	chr8:42625663-43240123	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42645800-42658600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr8:42647800-42660200	Weak transcription	Right Atrium	heart
3	chr8:42651600-42653000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:42651800-42653000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr8:42651800-42653000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:42651800-42655200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr8:42651800-42655400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr8:42651800-42657200	Enhancers	Primary T cells from cord blood	blood
9	chr8:42651800-42657200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr8:42652000-42655600	Enhancers	Fetal Thymus	thymus
11	chr8:42652000-42657000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr8:42652400-42652800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:42652400-42653000	Active TSS	Monocytes-CD14+_RO01746	blood
14	chr8:42652400-42660600	Weak transcription	Placenta	Placenta
15	chr8:42652600-42652800	Enhancers	Thymus	Thymus
16	chr8:42652600-42653000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr8:42652600-42653000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr8:42652600-42653200	Enhancers	Primary B cells from peripheral blood	blood
19	chr8:42652600-42653200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:42652600-42653600	Weak transcription	Primary T cells fromperipheralblood	blood

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