Variant report
| Variant | rs7003968 |
|---|---|
| Chromosome Location | chr8:42638528-42638529 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10092346 | 0.98[ASN][1000 genomes] |
| rs10105699 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10109040 | 0.84[ASN][1000 genomes] |
| rs10109429 | 0.87[AMR][1000 genomes] |
| rs11986893 | 0.92[ASN][1000 genomes] |
| rs11995030 | 0.84[ASN][1000 genomes] |
| rs1960346 | 0.92[ASN][1000 genomes] |
| rs2082591 | 0.89[ASN][1000 genomes] |
| rs2117225 | 0.84[ASN][1000 genomes] |
| rs28784665 | 0.92[ASN][1000 genomes] |
| rs28826992 | 0.89[ASN][1000 genomes] |
| rs34996273 | 0.87[ASN][1000 genomes] |
| rs4509313 | 0.92[ASN][1000 genomes] |
| rs4567031 | 0.92[ASN][1000 genomes] |
| rs4737068 | 0.85[ASN][1000 genomes] |
| rs4737071 | 0.92[ASN][1000 genomes] |
| rs4737072 | 0.80[AMR][1000 genomes] |
| rs56395510 | 0.93[ASN][1000 genomes] |
| rs6474418 | 0.86[ASN][1000 genomes] |
| rs6474420 | 0.88[ASN][1000 genomes] |
| rs6984252 | 0.92[ASN][1000 genomes] |
| rs6999449 | 0.98[ASN][1000 genomes] |
| rs6999753 | 0.80[AMR][1000 genomes] |
| rs7002223 | 0.83[AMR][1000 genomes] |
| rs7005126 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7821448 | 0.85[AMR][1000 genomes] |
| rs7825261 | 1.00[ASN][1000 genomes] |
| rs7826201 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7831096 | 0.92[ASN][1000 genomes] |
| rs7841834 | 0.92[ASN][1000 genomes] |
| rs7845365 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530880 | chr8:41895241-42755506 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034724 | chr8:42386707-42772203 | Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 36 gene(s) | inside rSNPs | diseases |
| 3 | nsv428516 | chr8:42577171-42731235 | Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv890846 | chr8:42625663-43240123 | Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 86 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:42637000-42639000 | Weak transcription | Pancreas | Pancrea |
