Variant report

Variant	rs10092731
Chromosome Location	chr8:9426280-9426281
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10093621	1.00[CEU][hapmap]
rs10094356	0.81[AMR][1000 genomes]
rs10098965	0.81[AMR][1000 genomes]
rs10101642	0.81[AMR][1000 genomes]
rs10111136	1.00[CEU][hapmap]
rs28415429	0.81[AMR][1000 genomes]
rs28452227	0.81[AMR][1000 genomes]
rs28479025	0.81[AMR][1000 genomes]
rs28523514	0.81[AMR][1000 genomes]
rs28532946	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28659851	1.00[EUR][1000 genomes]
rs28718248	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34203681	0.81[AMR][1000 genomes]
rs4129362	0.81[AMR][1000 genomes]
rs4354311	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4604434	1.00[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58165072	0.81[AMR][1000 genomes]
rs58946539	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59032403	1.00[EUR][1000 genomes]
rs60044335	0.81[AMR][1000 genomes]
rs60586503	1.00[EUR][1000 genomes]
rs73526947	0.81[AMR][1000 genomes]
rs73526950	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9414400-9459600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:9414800-9427800	Weak transcription	Right Ventricle	heart
3	chr8:9415000-9435400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:9415800-9434800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:9416000-9432400	Weak transcription	Primary B cells from cord blood	blood
6	chr8:9416000-9434600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:9416200-9432600	Weak transcription	Fetal Intestine Small	intestine
8	chr8:9416200-9434200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:9416400-9426800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:9416600-9430200	Weak transcription	Brain Substantia Nigra	brain
11	chr8:9417000-9434600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:9417200-9426600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:9417200-9427800	Weak transcription	Psoas Muscle	Psoas
14	chr8:9417200-9430000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr8:9417200-9434400	Weak transcription	Primary T cells from cord blood	blood
16	chr8:9417200-9450000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:9417600-9427800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr8:9417600-9437600	Weak transcription	Dnd41	blood
19	chr8:9418000-9435000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr8:9418600-9434800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:9419000-9426600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr8:9419400-9427800	Weak transcription	Ovary	ovary
23	chr8:9419600-9428200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:9420400-9429400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr8:9421600-9427800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr8:9421600-9429400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr8:9421800-9427800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr8:9422000-9432400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr8:9422200-9438400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr8:9422400-9428200	Weak transcription	Brain Angular Gyrus	brain
31	chr8:9422400-9434600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr8:9424200-9426800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr8:9424800-9440000	Weak transcription	Fetal Lung	lung
34	chr8:9425200-9426800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr8:9425400-9426800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr8:9425400-9427000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr8:9425800-9426400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr8:9425800-9429400	Weak transcription	Brain Anterior Caudate	brain
39	chr8:9425800-9435000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr8:9426200-9426400	Enhancers	Brain Hippocampus Middle	brain
41	chr8:9426200-9427000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr8:9426200-9430800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr8:9426200-9431400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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