Variant report

Variant	rs59032403
Chromosome Location	chr8:9434591-9434592
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10092731	1.00[EUR][1000 genomes]
rs10093621	0.87[AMR][1000 genomes]
rs10111136	0.87[AMR][1000 genomes]
rs11984704	1.00[AMR][1000 genomes]
rs28398294	0.87[AMR][1000 genomes]
rs28398977	0.87[AMR][1000 genomes]
rs28511573	0.87[AMR][1000 genomes]
rs28532946	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28659851	1.00[EUR][1000 genomes]
rs28670159	0.87[AMR][1000 genomes]
rs28704110	1.00[AMR][1000 genomes]
rs28718248	1.00[EUR][1000 genomes]
rs34585234	0.87[AMR][1000 genomes]
rs34926300	1.00[AMR][1000 genomes]
rs35557473	0.87[AMR][1000 genomes]
rs4354311	1.00[EUR][1000 genomes]
rs4604434	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893352	0.87[AMR][1000 genomes]
rs58946539	1.00[EUR][1000 genomes]
rs60586503	1.00[EUR][1000 genomes]
rs60862678	0.87[AMR][1000 genomes]
rs73526934	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9414400-9459600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:9415000-9435400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:9415800-9434800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:9416000-9434600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:9417000-9434600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr8:9417200-9450000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:9417600-9437600	Weak transcription	Dnd41	blood
8	chr8:9418000-9435000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr8:9418600-9434800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:9422200-9438400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr8:9422400-9434600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr8:9424800-9440000	Weak transcription	Fetal Lung	lung
13	chr8:9425800-9435000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:9427000-9435000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr8:9427400-9450000	Weak transcription	Thymus	Thymus
16	chr8:9428000-9434600	Weak transcription	HepG2	liver
17	chr8:9428000-9435400	Weak transcription	Fetal Muscle Leg	muscle
18	chr8:9428200-9434800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr8:9428200-9435400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:9428200-9435400	Weak transcription	Gastric	stomach
21	chr8:9428200-9466200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:9428400-9435000	Weak transcription	Right Ventricle	heart
23	chr8:9428400-9435200	Weak transcription	Aorta	Aorta
24	chr8:9428400-9435200	Weak transcription	Ovary	ovary
25	chr8:9428400-9435400	Weak transcription	Left Ventricle	heart
26	chr8:9428400-9450000	Weak transcription	Psoas Muscle	Psoas
27	chr8:9428800-9435000	Weak transcription	Fetal Heart	heart
28	chr8:9429000-9437200	Weak transcription	Brain Angular Gyrus	brain
29	chr8:9429000-9450000	Weak transcription	Fetal Kidney	kidney
30	chr8:9429200-9437800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr8:9430200-9434600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr8:9430200-9442400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr8:9430200-9449800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr8:9430600-9440400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr8:9431000-9440000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr8:9431000-9447000	Weak transcription	Brain Substantia Nigra	brain
37	chr8:9431000-9448800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr8:9431000-9449400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr8:9431000-9450000	Weak transcription	Colon Smooth Muscle	Colon
40	chr8:9431800-9437400	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr8:9432000-9435000	Weak transcription	NHDF-Ad	bronchial
42	chr8:9432000-9435400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr8:9432000-9444400	Weak transcription	NHEK	skin
44	chr8:9432000-9448200	Weak transcription	Fetal Brain Male	brain
45	chr8:9432200-9435000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr8:9432400-9435200	Weak transcription	Brain Hippocampus Middle	brain
47	chr8:9432400-9438200	Weak transcription	Osteobl	bone
48	chr8:9432600-9434600	Weak transcription	Brain Anterior Caudate	brain
49	chr8:9432600-9435400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr8:9432600-9438000	Weak transcription	HMEC	breast

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