Variant report

Variant	rs28670159
Chromosome Location	chr8:9420187-9420188
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:9419871..9422970-chr8:9429939..9431481,3	K562	blood:
2	chr8:9419871..9422970-chr8:9428718..9431481,5	K562	blood:
3	chr8:9412654..9416841-chr8:9418051..9421605,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272267	Chromatin interaction
ENSG00000173273	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10093621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10094356	0.89[AMR][1000 genomes]
rs10098965	0.89[AMR][1000 genomes]
rs10101221	0.89[AMR][1000 genomes]
rs10101642	0.89[AMR][1000 genomes]
rs10102866	0.89[AMR][1000 genomes]
rs10104208	0.89[AMR][1000 genomes]
rs10109453	0.89[AMR][1000 genomes]
rs10111136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10113714	0.87[AMR][1000 genomes]
rs11984704	0.87[AMR][1000 genomes]
rs28398294	1.00[AMR][1000 genomes]
rs28398977	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28415429	0.89[AMR][1000 genomes]
rs28452227	0.89[AMR][1000 genomes]
rs28469680	0.87[AMR][1000 genomes]
rs28479025	0.89[AMR][1000 genomes]
rs28511573	1.00[AMR][1000 genomes]
rs28523514	0.89[AMR][1000 genomes]
rs28700058	1.00[EUR][1000 genomes]
rs28704110	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28718248	0.89[AMR][1000 genomes]
rs28721416	0.87[AMR][1000 genomes]
rs34203681	0.89[AMR][1000 genomes]
rs34585234	1.00[AMR][1000 genomes]
rs34926300	0.87[AMR][1000 genomes]
rs35319853	0.87[AMR][1000 genomes]
rs35557473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4129362	0.89[AMR][1000 genomes]
rs4354311	0.89[AMR][1000 genomes]
rs55893352	1.00[AMR][1000 genomes]
rs58165072	0.89[AMR][1000 genomes]
rs58766098	0.87[AMR][1000 genomes]
rs58946539	0.89[AMR][1000 genomes]
rs59032403	0.87[AMR][1000 genomes]
rs60044335	0.89[AMR][1000 genomes]
rs60862678	1.00[AMR][1000 genomes]
rs61515500	0.89[AMR][1000 genomes]
rs73526934	1.00[AMR][1000 genomes]
rs73526947	0.89[AMR][1000 genomes]
rs73526950	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9414400-9420600	Weak transcription	Esophagus	oesophagus
2	chr8:9414400-9459600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:9414800-9427800	Weak transcription	Right Ventricle	heart
4	chr8:9415000-9435400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:9415800-9421600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:9415800-9434800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:9416000-9432400	Weak transcription	Primary B cells from cord blood	blood
8	chr8:9416000-9434600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:9416200-9420600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:9416200-9432600	Weak transcription	Fetal Intestine Small	intestine
11	chr8:9416200-9434200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr8:9416400-9421000	Weak transcription	NH-A	brain
13	chr8:9416400-9424800	Weak transcription	NHEK	skin
14	chr8:9416400-9426800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:9416600-9430200	Weak transcription	Brain Substantia Nigra	brain
16	chr8:9417000-9421600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:9417000-9434600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr8:9417200-9421000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr8:9417200-9421600	Weak transcription	Liver	Liver
20	chr8:9417200-9421600	Weak transcription	Brain Angular Gyrus	brain
21	chr8:9417200-9425200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:9417200-9426600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr8:9417200-9427800	Weak transcription	Psoas Muscle	Psoas
24	chr8:9417200-9430000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr8:9417200-9434400	Weak transcription	Primary T cells from cord blood	blood
26	chr8:9417200-9450000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr8:9417400-9425600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr8:9417600-9421600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr8:9417600-9427800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr8:9417600-9437600	Weak transcription	Dnd41	blood
31	chr8:9418000-9435000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr8:9418200-9425600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:9418600-9434800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr8:9419000-9421000	Weak transcription	Brain Anterior Caudate	brain
35	chr8:9419000-9425200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr8:9419000-9426600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr8:9419200-9420200	Weak transcription	GM12878-XiMat	blood
38	chr8:9419200-9421400	Weak transcription	Brain Hippocampus Middle	brain
39	chr8:9419200-9421800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:9419400-9427800	Weak transcription	Ovary	ovary
41	chr8:9419600-9428200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr8:9419800-9420400	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr8:9419800-9421200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr8:9420000-9420400	Enhancers	Colon Smooth Muscle	Colon

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