Variant report

Variant	rs10111136
Chromosome Location	chr8:9408452-9408453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr8:9408434-9409114	K562	blood:	n/a	n/a
2	MAX	chr8:9408106-9409124	K562	blood:	n/a	chr8:9408622-9408633 chr8:9408887-9408896
3	RCOR1	chr8:9408426-9409080	K562	blood:	n/a	n/a
4	JUN	chr8:9408075-9410039	K562	blood:	n/a	chr8:9408739-9408749 chr8:9408551-9408560
5	MAZ	chr8:9408395-9409035	K562	blood:	n/a	chr8:9408622-9408633 chr8:9408887-9408896
6	TRIM28	chr8:9408407-9409032	K562	blood:	n/a	n/a
7	CBX3	chr8:9408338-9408992	K562	blood:	n/a	n/a
8	TEAD4	chr8:9408223-9409108	K562	blood:	n/a	n/a
9	MYC	chr8:9408449-9409161	K562	blood:	n/a	chr8:9408622-9408633 chr8:9408887-9408896

Variant related genes	Relation type
TNKS	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10086860	0.80[AFR][1000 genomes]
rs10092731	1.00[CEU][hapmap]
rs10093621	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10094356	0.89[AMR][1000 genomes]
rs10098965	0.89[AMR][1000 genomes]
rs10101221	0.89[AMR][1000 genomes]
rs10101642	0.89[AMR][1000 genomes]
rs10102866	0.89[AMR][1000 genomes]
rs10103970	0.80[AFR][1000 genomes]
rs10104208	0.89[AMR][1000 genomes]
rs10109453	0.89[AMR][1000 genomes]
rs10113714	0.87[AMR][1000 genomes]
rs11984704	0.87[AMR][1000 genomes]
rs28398294	1.00[AMR][1000 genomes]
rs28398977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28452227	0.89[AMR][1000 genomes]
rs28479025	0.89[AMR][1000 genomes]
rs28511573	1.00[AMR][1000 genomes]
rs28523514	0.89[AMR][1000 genomes]
rs28670159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28700058	1.00[EUR][1000 genomes]
rs28704110	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28709017	0.80[AFR][1000 genomes]
rs28716954	0.80[AFR][1000 genomes]
rs28718248	0.89[AMR][1000 genomes]
rs34585234	1.00[AMR][1000 genomes]
rs34926300	0.87[AMR][1000 genomes]
rs35557473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4354311	0.89[AMR][1000 genomes]
rs4604434	1.00[CEU][hapmap]
rs55893352	1.00[AMR][1000 genomes]
rs58165072	0.89[AMR][1000 genomes]
rs58766098	0.87[AMR][1000 genomes]
rs58946539	0.89[AMR][1000 genomes]
rs59032403	0.87[AMR][1000 genomes]
rs60044335	0.89[AMR][1000 genomes]
rs60862678	1.00[AMR][1000 genomes]
rs61515500	0.89[AMR][1000 genomes]
rs73526934	1.00[AMR][1000 genomes]
rs73526947	0.89[AMR][1000 genomes]
rs73526950	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1030524	chr8:9183482-9412833	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1033031	chr8:9310266-9418941	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9390000-9409800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:9404000-9412000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:9404800-9412800	Weak transcription	Right Atrium	heart
4	chr8:9407400-9409000	Enhancers	Fetal Intestine Small	intestine
5	chr8:9407800-9412200	Weak transcription	Fetal Intestine Large	intestine
6	chr8:9408400-9410000	Enhancers	K562	blood

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