Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118673053..118675574-chr8:118677688..118679998,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10089009	0.84[EUR][1000 genomes]
rs10093382	0.86[EUR][1000 genomes]
rs10108248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955823	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955825	0.90[EUR][1000 genomes]
rs1160474	0.84[EUR][1000 genomes]
rs13254406	0.81[EUR][1000 genomes]
rs13280410	0.81[EUR][1000 genomes]
rs13439042	0.89[EUR][1000 genomes]
rs1383176	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1396351	0.93[EUR][1000 genomes]
rs1396354	0.89[EUR][1000 genomes]
rs1508555	0.86[EUR][1000 genomes]
rs1508566	0.89[EUR][1000 genomes]
rs1508569	0.93[EUR][1000 genomes]
rs16890041	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17753197	0.95[EUR][1000 genomes]
rs218017	0.87[CEU][hapmap]
rs218018	0.87[CEU][hapmap]
rs2202792	0.89[EUR][1000 genomes]
rs2202793	0.89[EUR][1000 genomes]
rs2202794	0.84[EUR][1000 genomes]
rs34660998	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4604472	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4876727	0.84[EUR][1000 genomes]
rs6469700	0.91[EUR][1000 genomes]
rs6469701	0.80[EUR][1000 genomes]
rs7815693	0.93[EUR][1000 genomes]
rs7838659	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118671600-118682600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:118676000-118681000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:118676000-118681200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:118676000-118681400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:118676000-118682000	Weak transcription	Ovary	ovary
6	chr8:118676000-118682400	Weak transcription	Fetal Lung	lung
7	chr8:118676000-118684000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:118676200-118681400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:118676200-118681600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:118676400-118681400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:118676400-118681400	Weak transcription	NHDF-Ad	bronchial
12	chr8:118676400-118681600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:118676600-118681400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:118677200-118681400	Weak transcription	HSMM	muscle
15	chr8:118678400-118681400	Weak transcription	NHLF	lung
16	chr8:118678600-118680000	Weak transcription	HepG2	liver
17	chr8:118678600-118680800	Weak transcription	Liver	Liver

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