Variant report

Variant	rs13254406
Chromosome Location	chr8:118630750-118630751
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118619974..118622515-chr8:118630290..118632485,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10089009	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10093232	0.81[EUR][1000 genomes]
rs10093382	0.88[EUR][1000 genomes]
rs10100465	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10108248	0.81[EUR][1000 genomes]
rs10955822	0.81[EUR][1000 genomes]
rs1160474	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13280410	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13439042	0.91[EUR][1000 genomes]
rs1383176	0.81[EUR][1000 genomes]
rs1396351	0.81[EUR][1000 genomes]
rs1396354	0.91[EUR][1000 genomes]
rs1508555	0.88[EUR][1000 genomes]
rs16890041	0.81[EUR][1000 genomes]
rs17753197	0.86[EUR][1000 genomes]
rs2202792	0.91[EUR][1000 genomes]
rs2202793	0.91[EUR][1000 genomes]
rs2202794	0.82[EUR][1000 genomes]
rs34660998	0.80[EUR][1000 genomes]
rs4604472	0.81[EUR][1000 genomes]
rs4876727	0.86[EUR][1000 genomes]
rs7815693	0.81[EUR][1000 genomes]
rs7838659	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1028387	chr8:118602105-118640162	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118627600-118631000	Weak transcription	Hela-S3	cervix
2	chr8:118627600-118636400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:118627800-118631400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:118627800-118631400	Weak transcription	NHLF	lung
5	chr8:118628000-118631000	Weak transcription	NH-A	brain
6	chr8:118628000-118631400	Weak transcription	HSMMtube	muscle
7	chr8:118628800-118631200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:118629000-118630800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:118629000-118631000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:118629000-118631000	Weak transcription	Osteobl	bone
11	chr8:118629000-118631400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:118629000-118636200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:118629200-118631200	Weak transcription	A549	lung
14	chr8:118629200-118631400	Weak transcription	HUVEC	blood vessel
15	chr8:118630000-118632600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:118630200-118630800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:118630400-118630800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:118630400-118631600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr8:118630400-118633200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:118630400-118633600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:118630600-118631400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr8:118630600-118631800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:118630600-118632800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:118630600-118632800	Enhancers	HSMM	muscle
25	chr8:118630600-118633400	Enhancers	NHEK	skin
26	chr8:118630600-118633800	Enhancers	HMEC	breast
27	chr8:118630600-118634600	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links