Variant report

Variant	rs17753197
Chromosome Location	chr8:118663798-118663799
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10089009	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10093232	0.95[EUR][1000 genomes]
rs10093382	0.85[EUR][1000 genomes]
rs10100465	0.81[EUR][1000 genomes]
rs10108248	0.95[EUR][1000 genomes]
rs10955822	0.95[EUR][1000 genomes]
rs10955823	0.89[EUR][1000 genomes]
rs10955825	0.91[EUR][1000 genomes]
rs1160474	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13254406	0.86[EUR][1000 genomes]
rs13280410	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13439042	0.88[EUR][1000 genomes]
rs1383176	0.95[EUR][1000 genomes]
rs1396351	0.95[EUR][1000 genomes]
rs1396354	0.88[EUR][1000 genomes]
rs1508555	0.85[EUR][1000 genomes]
rs1508566	0.91[EUR][1000 genomes]
rs1508569	0.91[EUR][1000 genomes]
rs16890041	0.95[EUR][1000 genomes]
rs218018	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs2202792	0.88[EUR][1000 genomes]
rs2202793	0.88[EUR][1000 genomes]
rs2202794	0.82[EUR][1000 genomes]
rs34660998	0.94[EUR][1000 genomes]
rs4604472	0.95[EUR][1000 genomes]
rs4876727	0.83[EUR][1000 genomes]
rs6469700	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6469701	0.82[EUR][1000 genomes]
rs7815693	0.95[EUR][1000 genomes]
rs7838659	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118662200-118663800	Enhancers	HSMMtube	muscle
2	chr8:118663000-118664200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:118663000-118664600	Weak transcription	NH-A	brain
4	chr8:118663000-118665400	Weak transcription	Fetal Stomach	stomach
5	chr8:118663000-118666000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:118663000-118666000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:118663000-118666000	Weak transcription	NHEK	skin
8	chr8:118663000-118675600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:118663000-118675600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:118663000-118676600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:118663000-118677000	Weak transcription	HSMM	muscle
12	chr8:118663000-118679200	Weak transcription	Aorta	Aorta
13	chr8:118663200-118666000	Weak transcription	HMEC	breast
14	chr8:118663200-118667000	Weak transcription	Liver	Liver
15	chr8:118663200-118675600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:118663400-118664200	Weak transcription	Fetal Lung	lung
17	chr8:118663600-118666200	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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