Variant report

Variant	rs1009401
Chromosome Location	chr22:32988254-32988255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11545749	1.00[CHB][hapmap]
rs12167726	1.00[CHB][hapmap]
rs131047	1.00[YRI][hapmap]
rs16990408	1.00[CHB][hapmap]
rs16990443	1.00[CHB][hapmap]
rs5754140	1.00[JPT][hapmap]
rs5998473	1.00[CHB][hapmap]
rs5998585	1.00[JPT][hapmap]
rs5998608	1.00[CHB][hapmap]
rs73881740	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73881741	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73881742	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73881744	0.97[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73881746	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73881747	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73881749	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32979400-32994200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:32981600-32996200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr22:32986800-32989200	Enhancers	Hela-S3	cervix
4	chr22:32987000-32988800	Enhancers	Osteobl	bone
5	chr22:32987600-32988400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr22:32988000-32989200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr22:32988000-32989400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr22:32988000-32993200	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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