Variant report

Variant	rs131047
Chromosome Location	chr22:32980147-32980148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32868055-32872511..22:32979325-32981394	Hela-S3	cervix:
2	22:32096851-32100847..22:32979325-32981394	Hela-S3	cervix:
3	22:32979325-32981394..22:33262063-33266567	Hela-S3	cervix:
4	22:32920308-32927723..22:32979325-32981394	Hela-S3	cervix:
5	22:32162110-32166713..22:32979325-32981394	Hela-S3	cervix:
6	22:32170492-32188129..22:32979325-32981394	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FBXO7-2	chr22:32979863-32980190	ENSG00000236054.1

Variant related genes	Relation type
ENSG00000100225	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000183530	Chromatin interaction
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1009401	1.00[YRI][hapmap]
rs12166325	1.00[JPT][hapmap]
rs135583	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135584	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4820083	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4821076	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6518774	1.00[JPT][hapmap]
rs73154334	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73154335	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154336	0.98[EUR][1000 genomes]
rs739104	0.90[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8141075	1.00[JPT][hapmap]
rs9609546	1.00[JPT][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32974000-32980800	Weak transcription	Left Ventricle	heart
2	chr22:32978600-32981400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr22:32978600-32981600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr22:32978600-32981800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr22:32978800-32981600	Enhancers	Adipose Nuclei	Adipose
6	chr22:32978800-32981800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr22:32978800-32981800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr22:32979000-32980400	Enhancers	Liver	Liver
9	chr22:32979000-32981600	Enhancers	Hela-S3	cervix
10	chr22:32979200-32981000	Weak transcription	Right Ventricle	heart
11	chr22:32979200-32981400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr22:32979200-32981400	Enhancers	NHLF	lung
13	chr22:32979200-32981600	Enhancers	Osteobl	bone
14	chr22:32979400-32980400	Weak transcription	Brain Germinal Matrix	brain
15	chr22:32979400-32980400	Flanking Active TSS	HepG2	liver
16	chr22:32979400-32980600	Weak transcription	HSMMtube	muscle
17	chr22:32979400-32980800	Enhancers	Fetal Lung	lung
18	chr22:32979400-32981200	Weak transcription	Lung	lung
19	chr22:32979400-32981600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr22:32979400-32981600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr22:32979400-32994200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr22:32979600-32980800	Weak transcription	Right Atrium	heart
23	chr22:32979600-32983400	Weak transcription	Spleen	Spleen
24	chr22:32979600-32983600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr22:32979800-32980200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr22:32979800-32980400	Weak transcription	Fetal Brain Male	brain
27	chr22:32979800-32980600	Weak transcription	Fetal Heart	heart
28	chr22:32979800-32981000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr22:32980000-32980200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr22:32980000-32980400	Enhancers	Placenta	Placenta

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