Variant report

Variant	rs4820083
Chromosome Location	chr22:32978753-32978754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32977838..32980005-chr22:33196741..33198694,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100234	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12166325	1.00[JPT][hapmap]
rs131047	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135583	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135584	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16990824	0.82[MEX][hapmap]
rs4821076	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6518774	1.00[JPT][hapmap]
rs7287726	1.00[JPT][hapmap]
rs73154334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73154335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154336	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs739104	0.81[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8141075	1.00[JPT][hapmap]
rs9609546	1.00[JPT][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32971000-32980000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr22:32973000-32979200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr22:32973000-32979200	Weak transcription	Right Atrium	heart
4	chr22:32973000-32979600	Weak transcription	Fetal Heart	heart
5	chr22:32973400-32978800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr22:32973600-32979400	Weak transcription	Fetal Lung	lung
7	chr22:32974000-32980800	Weak transcription	Left Ventricle	heart
8	chr22:32976000-32979200	Weak transcription	Osteobl	bone
9	chr22:32976200-32978800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr22:32976200-32978800	Weak transcription	HSMMtube	muscle
11	chr22:32976200-32979200	Weak transcription	NHLF	lung
12	chr22:32976400-32979000	Weak transcription	Liver	Liver
13	chr22:32976400-32979200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr22:32976400-32979400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr22:32976800-32979000	Weak transcription	Hela-S3	cervix
16	chr22:32977000-32978800	Weak transcription	Adipose Nuclei	Adipose
17	chr22:32978200-32979400	Enhancers	HepG2	liver
18	chr22:32978600-32978800	Enhancers	Ovary	ovary
19	chr22:32978600-32979200	Enhancers	Right Ventricle	heart
20	chr22:32978600-32979400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr22:32978600-32979400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr22:32978600-32979400	Enhancers	Lung	lung
23	chr22:32978600-32979600	Enhancers	Fetal Muscle Trunk	muscle
24	chr22:32978600-32979600	Enhancers	Spleen	Spleen
25	chr22:32978600-32979800	Enhancers	Fetal Muscle Leg	muscle
26	chr22:32978600-32981400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr22:32978600-32981600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr22:32978600-32981800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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