Variant report

Variant	rs135583
Chromosome Location	chr22:32979080-32979081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr22:32979026-32979488	MCF-7	breast:	n/a	n/a
2	RAD21	chr22:32979049-32979521	MCF-7	breast:	n/a	n/a
3	RAD21	chr22:32978905-32979364	HepG2	liver:	n/a	n/a
4	RAD21	chr22:32979040-32979318	HepG2	liver:	n/a	n/a
5	SMC3	chr22:32978997-32979413	HepG2	liver:	n/a	n/a
6	STAT1	chr22:32978950-32979640	Hela-S3	cervix:	n/a	chr22:32979215-32979224 chr22:32979216-32979225 chr22:32979314-32979325
7	RAD21	chr22:32978997-32979499	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32977838..32980005-chr22:33196741..33198694,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236054	TF binding region
ENSG00000100234	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12166325	1.00[JPT][hapmap]
rs131047	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135584	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4820083	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4821076	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6518774	1.00[JPT][hapmap]
rs7287726	1.00[JPT][hapmap]
rs73154334	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73154335	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154336	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs739104	0.81[CEU][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8141075	1.00[JPT][hapmap]
rs9609546	1.00[JPT][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32971000-32980000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr22:32973000-32979200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr22:32973000-32979200	Weak transcription	Right Atrium	heart
4	chr22:32973000-32979600	Weak transcription	Fetal Heart	heart
5	chr22:32973600-32979400	Weak transcription	Fetal Lung	lung
6	chr22:32974000-32980800	Weak transcription	Left Ventricle	heart
7	chr22:32976000-32979200	Weak transcription	Osteobl	bone
8	chr22:32976200-32979200	Weak transcription	NHLF	lung
9	chr22:32976400-32979200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr22:32976400-32979400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr22:32978200-32979400	Enhancers	HepG2	liver
12	chr22:32978600-32979200	Enhancers	Right Ventricle	heart
13	chr22:32978600-32979400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr22:32978600-32979400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr22:32978600-32979400	Enhancers	Lung	lung
16	chr22:32978600-32979600	Enhancers	Fetal Muscle Trunk	muscle
17	chr22:32978600-32979600	Enhancers	Spleen	Spleen
18	chr22:32978600-32979800	Enhancers	Fetal Muscle Leg	muscle
19	chr22:32978600-32981400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr22:32978600-32981600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr22:32978600-32981800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr22:32978800-32979400	Enhancers	HSMMtube	muscle
23	chr22:32978800-32981600	Enhancers	Adipose Nuclei	Adipose
24	chr22:32978800-32981800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr22:32978800-32981800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr22:32979000-32979400	Enhancers	Brain Germinal Matrix	brain
27	chr22:32979000-32979800	Enhancers	Fetal Brain Male	brain
28	chr22:32979000-32980400	Enhancers	Liver	Liver
29	chr22:32979000-32981600	Enhancers	Hela-S3	cervix

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