Variant report

Variant	rs1009466
Chromosome Location	chr15:77955355-77955356
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11631120	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11638112	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12905478	1.00[JPT][hapmap]
rs2137110	0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56190272	0.98[ASN][1000 genomes]
rs72744591	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8030859	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77947000-77965200	Enhancers	Fetal Brain Male	brain
2	chr15:77949200-77956200	Enhancers	Fetal Brain Female	brain
3	chr15:77949400-77956800	Weak transcription	Spleen	Spleen
4	chr15:77951000-77957000	Enhancers	Fetal Intestine Small	intestine
5	chr15:77952600-77955600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:77952600-77956000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:77952800-77955600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:77952800-77955600	Weak transcription	Colonic Mucosa	Colon
9	chr15:77952800-77956000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:77953200-77955400	Weak transcription	Brain Angular Gyrus	brain
11	chr15:77953200-77955600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:77953800-77956600	Enhancers	Fetal Intestine Large	intestine
13	chr15:77954000-77955600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:77954600-77957400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:77955000-77956800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:77955200-77956800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:77955200-77957000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr15:77955200-77957200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr15:77955200-77957800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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