Variant report

Variant	rs56190272
Chromosome Location	chr15:77949887-77949888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1009466	0.98[ASN][1000 genomes]
rs11631120	0.83[ASN][1000 genomes]
rs11638387	0.80[ASN][1000 genomes]
rs12901420	0.80[ASN][1000 genomes]
rs12914049	0.80[ASN][1000 genomes]
rs2137110	0.98[ASN][1000 genomes]
rs35091811	0.80[AMR][1000 genomes]
rs35971971	0.80[ASN][1000 genomes]
rs72744591	0.98[ASN][1000 genomes]
rs8030859	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77943200-77951800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:77947000-77951000	Weak transcription	Fetal Intestine Small	intestine
3	chr15:77947000-77965200	Enhancers	Fetal Brain Male	brain
4	chr15:77947400-77950800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr15:77947400-77951800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:77947800-77951000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:77948400-77950600	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr15:77948400-77952400	Weak transcription	Brain Anterior Caudate	brain
9	chr15:77948800-77952400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:77949200-77950200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:77949200-77956200	Enhancers	Fetal Brain Female	brain
12	chr15:77949400-77956800	Weak transcription	Spleen	Spleen
13	chr15:77949600-77950800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:77949800-77950200	Enhancers	Fetal Lung	lung
15	chr15:77949800-77950600	Bivalent Enhancer	Fetal Stomach	stomach
16	chr15:77949800-77951800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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