Variant report

Variant	rs11631120
Chromosome Location	chr15:77964106-77964107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77956759..77959343-chr15:77962913..77965567,2	MCF-7	breast:
2	chr15:77962505..77965298-chr15:77965615..77967291,2	K562	blood:
3	chr15:77952697..77954312-chr15:77961753..77964123,2	K562	blood:
4	chr15:77963405..77965079-chr15:77980096..77983054,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1009466	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11638112	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11638387	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12900699	0.82[ASN][1000 genomes]
rs12901113	0.82[ASN][1000 genomes]
rs12901420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12901624	0.82[ASN][1000 genomes]
rs12905478	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12906523	0.82[ASN][1000 genomes]
rs12907043	0.82[ASN][1000 genomes]
rs12914049	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12914780	0.82[ASN][1000 genomes]
rs2137110	0.83[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs34164838	0.82[ASN][1000 genomes]
rs34440622	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs34464560	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34520587	0.85[ASN][1000 genomes]
rs35091811	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35353380	0.82[ASN][1000 genomes]
rs35390302	0.85[ASN][1000 genomes]
rs35409437	0.82[ASN][1000 genomes]
rs35971971	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36078248	0.85[ASN][1000 genomes]
rs56190272	0.83[ASN][1000 genomes]
rs66744051	0.85[ASN][1000 genomes]
rs66951253	0.85[ASN][1000 genomes]
rs67818419	0.85[ASN][1000 genomes]
rs67965873	0.85[ASN][1000 genomes]
rs72744591	0.82[ASN][1000 genomes]
rs8030859	0.89[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77947000-77965200	Enhancers	Fetal Brain Male	brain
2	chr15:77956800-77986800	Weak transcription	Brain Angular Gyrus	brain
3	chr15:77958200-77982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:77959800-77984800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:77960200-77968800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:77961600-77968200	Weak transcription	Right Atrium	heart
7	chr15:77962800-77964600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:77963000-77964200	Bivalent Enhancer	Placenta	Placenta
9	chr15:77963600-77968400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:77963800-77964400	Enhancers	Right Ventricle	heart
11	chr15:77964000-77964800	Enhancers	Fetal Brain Female	brain

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