Variant report
| Variant | rs10096511 |
|---|---|
| Chromosome Location | chr8:10810451-10810452 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10087923 | 0.81[ASN][1000 genomes] |
| rs10088408 | 0.89[EUR][1000 genomes] |
| rs10096381 | 0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10096421 | 0.90[EUR][1000 genomes] |
| rs10111950 | 0.92[EUR][1000 genomes] |
| rs11250097 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11250098 | 0.90[EUR][1000 genomes] |
| rs11250099 | 0.90[EUR][1000 genomes] |
| rs13256208 | 0.86[ASN][1000 genomes] |
| rs34031674 | 0.92[ASN][1000 genomes] |
| rs34738102 | 0.84[EUR][1000 genomes] |
| rs35910832 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4314618 | 0.90[EUR][1000 genomes] |
| rs4451266 | 0.83[EUR][1000 genomes] |
| rs4451267 | 0.84[EUR][1000 genomes] |
| rs4841465 | 0.92[EUR][1000 genomes] |
| rs4841466 | 0.86[EUR][1000 genomes] |
| rs60240827 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6601544 | 0.84[EUR][1000 genomes] |
| rs6996943 | 0.84[EUR][1000 genomes] |
| rs7004551 | 0.87[ASN][1000 genomes] |
| rs7010262 | 0.84[EUR][1000 genomes] |
| rs7010719 | 0.84[EUR][1000 genomes] |
| rs7011106 | 0.84[EUR][1000 genomes] |
| rs7011268 | 0.84[EUR][1000 genomes] |
| rs7014861 | 0.83[EUR][1000 genomes] |
| rs7821006 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv917085 | chr8:10237508-10828204 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv522127 | chr8:10797831-10815515 | Weak transcription Enhancers Bivalent Enhancer Genic enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv521721 | chr8:10802102-10836472 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv519822 | chr8:10803617-10815515 | Weak transcription Enhancers Bivalent Enhancer Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv518360 | chr8:10805015-10816873 | Enhancers Bivalent Enhancer Weak transcription Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10096511 | C8orf13 | Cis_1M | lymphoblastoid | RTeQTL |
| rs10096511 | BLK | Cis_1M | lymphoblastoid | RTeQTL |
| rs10096511 | C8orf5 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:10807400-10818200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr8:10810400-10818200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
