Variant report

Variant	rs7014861
Chromosome Location	chr8:10837019-10837020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10088408	0.84[EUR][1000 genomes]
rs10096381	0.82[EUR][1000 genomes]
rs10096421	0.91[EUR][1000 genomes]
rs10096511	0.83[EUR][1000 genomes]
rs10111950	0.82[EUR][1000 genomes]
rs11250097	0.86[EUR][1000 genomes]
rs11250098	0.81[EUR][1000 genomes]
rs11250099	0.84[EUR][1000 genomes]
rs34738102	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35910832	0.83[EUR][1000 genomes]
rs4314618	0.82[EUR][1000 genomes]
rs4451266	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4451267	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4841465	0.85[EUR][1000 genomes]
rs4841466	0.84[EUR][1000 genomes]
rs6601544	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6996943	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7010262	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7010719	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7011106	0.95[EUR][1000 genomes]
rs7011268	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7014861	C8orf13	Cis_1M	lymphoblastoid	RTeQTL
rs7014861	BLK	Cis_1M	lymphoblastoid	RTeQTL
rs7014861	C8orf5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10837000-10837200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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