Variant report

Variant	rs10097943
Chromosome Location	chr8:105209090-105209091
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105207373..105209743-chr8:105210313..105212333,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10089377	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10089436	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10089588	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10089821	1.00[AMR][1000 genomes]
rs10100400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10102115	1.00[AMR][1000 genomes]
rs10102236	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10102529	1.00[AMR][1000 genomes]
rs10104576	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105188	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13438959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28373733	1.00[AMR][1000 genomes]
rs28445177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28483456	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28515578	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28527391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28548325	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28567509	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28625300	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709318	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9886506	1.00[AMR][1000 genomes]
rs9886655	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847227	chr8:105025912-105251147	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv891251	chr8:105054446-105283340	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv891252	chr8:105106882-105227985	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv831416	chr8:105137789-105296965	Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv2762762	chr8:105189986-105247833	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105188400-105211800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:105205200-105210800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:105208000-105209800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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