Variant report

Variant	rs28709318
Chromosome Location	chr8:105200807-105200808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10089377	1.00[AMR][1000 genomes]
rs10089436	1.00[AMR][1000 genomes]
rs10089588	1.00[AMR][1000 genomes]
rs10089821	1.00[AMR][1000 genomes]
rs10097943	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100400	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101596	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10102115	1.00[AMR][1000 genomes]
rs10102236	1.00[AMR][1000 genomes]
rs10102529	1.00[AMR][1000 genomes]
rs10104576	1.00[AMR][1000 genomes]
rs10105188	1.00[AMR][1000 genomes]
rs13438959	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28373733	1.00[AMR][1000 genomes]
rs28445177	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28483456	1.00[AMR][1000 genomes]
rs28515578	1.00[AMR][1000 genomes]
rs28527391	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28548325	1.00[AMR][1000 genomes]
rs28567509	1.00[AMR][1000 genomes]
rs28625300	1.00[AMR][1000 genomes]
rs9886506	1.00[AMR][1000 genomes]
rs9886655	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847227	chr8:105025912-105251147	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv891251	chr8:105054446-105283340	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv891252	chr8:105106882-105227985	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv831416	chr8:105137789-105296965	Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv2762762	chr8:105189986-105247833	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105188400-105211800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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