Variant report
| Variant | rs9886506 |
|---|---|
| Chromosome Location | chr8:105248520-105248521 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:105242316..105245331-chr8:105245427..105248797,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10089377 | 1.00[AMR][1000 genomes] |
| rs10089436 | 1.00[AMR][1000 genomes] |
| rs10089588 | 1.00[AMR][1000 genomes] |
| rs10089821 | 1.00[AMR][1000 genomes] |
| rs10097943 | 1.00[AMR][1000 genomes] |
| rs10100400 | 1.00[AMR][1000 genomes] |
| rs10101596 | 1.00[AMR][1000 genomes] |
| rs10102115 | 1.00[AMR][1000 genomes] |
| rs10102236 | 1.00[AMR][1000 genomes] |
| rs10102529 | 1.00[AMR][1000 genomes] |
| rs10104576 | 1.00[AMR][1000 genomes] |
| rs10105188 | 1.00[AMR][1000 genomes] |
| rs13438959 | 1.00[AMR][1000 genomes] |
| rs28373733 | 1.00[AMR][1000 genomes] |
| rs28445177 | 1.00[AMR][1000 genomes] |
| rs28483456 | 1.00[AMR][1000 genomes] |
| rs28515578 | 1.00[AMR][1000 genomes] |
| rs28527391 | 1.00[AMR][1000 genomes] |
| rs28548325 | 1.00[AMR][1000 genomes] |
| rs28567509 | 1.00[AMR][1000 genomes] |
| rs28625300 | 1.00[AMR][1000 genomes] |
| rs28709318 | 1.00[AMR][1000 genomes] |
| rs9886655 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1847227 | chr8:105025912-105251147 | Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv891251 | chr8:105054446-105283340 | Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv831416 | chr8:105137789-105296965 | Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1016087 | chr8:105228670-105934368 | Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:105236800-105257200 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr8:105237600-105252800 | Weak transcription | HMEC | breast |
