Variant report

Variant	rs10099549
Chromosome Location	chr8:131411185-131411186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10086454	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10086773	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10087626	0.87[ASN][1000 genomes]
rs1008819	0.83[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs10090106	0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10090231	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10090767	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10099586	0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10103132	0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10107054	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10111650	0.91[ASN][1000 genomes]
rs10956520	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs10956522	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10956523	0.89[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11784638	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11984909	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs11992217	0.87[ASN][1000 genomes]
rs11992885	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11992932	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11992957	0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11993714	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11993741	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11997462	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12678030	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12678062	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12678808	0.94[ASN][1000 genomes]
rs12680178	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12680697	0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12681664	0.88[ASN][1000 genomes]
rs13249894	0.94[ASN][1000 genomes]
rs13255178	0.86[ASN][1000 genomes]
rs13260346	0.89[ASN][1000 genomes]
rs13272051	0.83[EUR][1000 genomes]
rs13275147	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13275883	0.83[ASN][1000 genomes]
rs13276168	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1340020	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs16904260	0.89[ASN][1000 genomes]
rs16904267	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16904268	0.92[ASN][1000 genomes]
rs17215817	0.94[ASN][1000 genomes]
rs17287702	0.89[ASN][1000 genomes]
rs1978551	0.83[CEU][hapmap]
rs2791349	0.87[CEU][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs28545757	0.87[ASN][1000 genomes]
rs28559741	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28562521	0.98[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28707621	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs28716119	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34003529	0.92[ASN][1000 genomes]
rs34019017	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs34188408	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34542318	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34676374	0.98[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs34737610	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34987314	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs35123370	0.98[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs35229803	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35592532	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4504679	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4574884	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs4609234	0.83[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5027392	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56677646	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6470819	0.83[ASN][1000 genomes]
rs6986119	0.98[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6986163	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6990443	0.89[ASN][1000 genomes]
rs6994854	0.83[EUR][1000 genomes]
rs7011509	0.92[YRI][hapmap]
rs7014098	0.89[ASN][1000 genomes]
rs7016144	0.92[YRI][hapmap]
rs7812299	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7812469	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7822048	0.83[EUR][1000 genomes]
rs7822259	0.88[ASN][1000 genomes]
rs7822957	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7823146	0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7828824	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7832888	0.81[EUR][1000 genomes]
rs7838650	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7844582	0.85[ASN][1000 genomes]
rs9297807	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131371600-131419800	Weak transcription	Aorta	Aorta
2	chr8:131395600-131434200	Weak transcription	Hela-S3	cervix
3	chr8:131398200-131413600	Weak transcription	Fetal Intestine Small	intestine
4	chr8:131398800-131417000	Weak transcription	Esophagus	oesophagus
5	chr8:131399400-131419600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr8:131401600-131421800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:131402600-131418000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:131405600-131412800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:131405600-131422800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:131405600-131423600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:131406800-131417000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:131407000-131414600	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr8:131407200-131414400	Strong transcription	NHEK	skin
14	chr8:131407200-131414800	Strong transcription	A549	lung
15	chr8:131407400-131413600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr8:131407400-131419600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr8:131407800-131416800	Weak transcription	HepG2	liver
18	chr8:131407800-131417000	Weak transcription	Lung	lung
19	chr8:131407800-131419400	Weak transcription	Spleen	Spleen
20	chr8:131408000-131412200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:131408000-131422200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr8:131408800-131413000	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr8:131409000-131413800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr8:131409000-131416800	Weak transcription	Fetal Kidney	kidney
25	chr8:131409200-131412200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr8:131409200-131416800	Weak transcription	NH-A	brain
27	chr8:131409200-131422400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:131409200-131424000	Weak transcription	Right Ventricle	heart
29	chr8:131409200-131426400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr8:131409200-131431800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr8:131409400-131411200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr8:131409400-131412200	Weak transcription	Fetal Stomach	stomach
33	chr8:131409400-131413800	Weak transcription	Colon Smooth Muscle	Colon
34	chr8:131409400-131413800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr8:131409400-131414400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:131409400-131414400	Weak transcription	Brain Germinal Matrix	brain
37	chr8:131409400-131416200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr8:131409400-131416600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:131409400-131421800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr8:131409600-131411200	Genic enhancers	NHLF	lung
41	chr8:131409600-131411400	Strong transcription	HMEC	breast
42	chr8:131409600-131428400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr8:131409800-131411400	Strong transcription	HSMM	muscle
44	chr8:131409800-131414200	Strong transcription	Osteobl	bone
45	chr8:131409800-131414600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr8:131409800-131415000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr8:131409800-131417000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr8:131410000-131411600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr8:131410000-131411600	Strong transcription	NHDF-Ad	bronchial
50	chr8:131410000-131414000	Weak transcription	HSMMtube	muscle

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