Variant report

Variant	rs7016144
Chromosome Location	chr8:131400888-131400889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131369806..131373851-chr8:131400186..131403048,3	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10086454	0.94[ASW][hapmap];0.90[CEU][hapmap];0.84[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.94[EUR][1000 genomes]
rs1008819	0.90[CEU][hapmap]
rs10090106	0.89[CEU][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes]
rs10090231	0.94[ASW][hapmap];0.90[CEU][hapmap];0.84[GIH][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes]
rs10090767	0.94[ASW][hapmap];0.90[CEU][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes]
rs10099549	0.92[YRI][hapmap]
rs10099586	0.89[CEU][hapmap];0.93[YRI][hapmap];0.93[EUR][1000 genomes]
rs10103132	0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10107054	0.85[EUR][1000 genomes]
rs10956522	0.91[EUR][1000 genomes]
rs11984909	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11992217	0.81[EUR][1000 genomes]
rs11992885	0.88[EUR][1000 genomes]
rs11992932	0.94[ASW][hapmap];0.90[CEU][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes]
rs11992957	0.89[CEU][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes]
rs11993714	0.94[ASW][hapmap];0.90[CEU][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes]
rs11993741	0.94[ASW][hapmap];0.90[CEU][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes]
rs11997462	0.94[ASW][hapmap];0.90[CEU][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes]
rs12678030	0.91[EUR][1000 genomes]
rs12678062	0.90[EUR][1000 genomes]
rs12680178	0.91[EUR][1000 genomes]
rs12680697	0.89[CEU][hapmap];0.93[YRI][hapmap];0.91[EUR][1000 genomes]
rs13249894	0.90[EUR][1000 genomes]
rs13272051	1.00[ASN][1000 genomes]
rs13275147	0.91[EUR][1000 genomes]
rs13276168	0.90[EUR][1000 genomes]
rs1340020	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs16904268	0.90[EUR][1000 genomes]
rs1978551	0.90[CEU][hapmap]
rs2791349	0.90[CEU][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs28559741	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28562521	0.89[EUR][1000 genomes]
rs28707621	0.88[EUR][1000 genomes]
rs28716119	0.88[EUR][1000 genomes]
rs34003529	0.90[EUR][1000 genomes]
rs34019017	0.90[EUR][1000 genomes]
rs34188408	0.88[EUR][1000 genomes]
rs34334020	0.91[ASN][1000 genomes]
rs34542318	0.88[EUR][1000 genomes]
rs34676374	0.90[EUR][1000 genomes]
rs34737610	0.88[EUR][1000 genomes]
rs34987314	0.90[EUR][1000 genomes]
rs35229803	0.89[EUR][1000 genomes]
rs35592532	0.88[EUR][1000 genomes]
rs4526396	0.97[ASN][1000 genomes]
rs4574884	0.90[CEU][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs56677646	0.88[EUR][1000 genomes]
rs6986119	0.90[EUR][1000 genomes]
rs6986163	0.90[EUR][1000 genomes]
rs6994854	1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7007359	0.97[ASN][1000 genomes]
rs7011509	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812299	0.94[ASW][hapmap];0.90[CEU][hapmap];0.84[GIH][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.93[YRI][hapmap];0.91[EUR][1000 genomes]
rs7812469	0.94[ASW][hapmap];0.90[CEU][hapmap];0.84[GIH][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.93[YRI][hapmap];0.91[EUR][1000 genomes]
rs7822048	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs7822957	0.88[EUR][1000 genomes]
rs7823146	0.89[CEU][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes]
rs7828824	0.91[EUR][1000 genomes]
rs7832888	0.90[ASN][1000 genomes]
rs7838650	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv982153	chr8:131391067-131407495	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131371600-131419800	Weak transcription	Aorta	Aorta
2	chr8:131374600-131409000	Weak transcription	Fetal Brain Female	brain
3	chr8:131381000-131401400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:131383800-131409200	Weak transcription	Right Atrium	heart
5	chr8:131384800-131408200	Weak transcription	Adipose Nuclei	Adipose
6	chr8:131384800-131408800	Weak transcription	Brain Germinal Matrix	brain
7	chr8:131385800-131408600	Weak transcription	Fetal Brain Male	brain
8	chr8:131388600-131407200	Weak transcription	HSMM	muscle
9	chr8:131388800-131408400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:131389400-131409200	Weak transcription	Pancreas	Pancrea
11	chr8:131390400-131401000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:131390400-131407200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:131390800-131401200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:131390800-131401400	Weak transcription	Liver	Liver
15	chr8:131390800-131407000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr8:131392400-131407600	Weak transcription	HSMMtube	muscle
17	chr8:131393000-131401000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:131394200-131408800	Weak transcription	NH-A	brain
19	chr8:131395600-131434200	Weak transcription	Hela-S3	cervix
20	chr8:131396200-131408600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr8:131396800-131408400	Weak transcription	Fetal Heart	heart
22	chr8:131397200-131407400	Weak transcription	Spleen	Spleen
23	chr8:131397400-131407200	Weak transcription	Ovary	ovary
24	chr8:131398200-131408400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr8:131398200-131413600	Weak transcription	Fetal Intestine Small	intestine
26	chr8:131398600-131408200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr8:131398800-131408800	Weak transcription	Right Ventricle	heart
28	chr8:131398800-131417000	Weak transcription	Esophagus	oesophagus
29	chr8:131399000-131401000	Weak transcription	Osteobl	bone
30	chr8:131399000-131404800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr8:131399000-131407000	Weak transcription	Fetal Muscle Leg	muscle
32	chr8:131399200-131403000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:131399200-131404800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr8:131399200-131404800	Weak transcription	HepG2	liver
35	chr8:131399200-131405400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr8:131399200-131407000	Weak transcription	Fetal Stomach	stomach
37	chr8:131399200-131407200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr8:131399200-131407200	Weak transcription	Left Ventricle	heart
39	chr8:131399200-131408800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr8:131399200-131408800	Weak transcription	Brain Anterior Caudate	brain
41	chr8:131399400-131408600	Weak transcription	Fetal Lung	lung
42	chr8:131399400-131409600	Weak transcription	HMEC	breast
43	chr8:131399400-131419600	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr8:131399600-131402800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr8:131399600-131404800	Weak transcription	NHLF	lung
46	chr8:131399600-131407000	Weak transcription	Lung	lung
47	chr8:131400000-131403200	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr8:131400200-131401000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr8:131400200-131401000	Strong transcription	A549	lung
50	chr8:131400200-131401600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links