Variant report

Variant	rs11984909
Chromosome Location	chr8:131408334-131408335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10086454	0.84[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10090106	0.80[CEU][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10090231	0.84[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10090767	0.84[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10099549	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs10099586	0.81[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10103132	0.81[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10107054	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10956522	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11784638	0.85[AFR][1000 genomes]
rs11992885	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11992932	0.84[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11992957	0.84[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11993714	0.84[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11993741	0.84[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11997462	0.84[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12678030	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12678062	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12680178	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12680697	0.81[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13249894	0.87[EUR][1000 genomes]
rs13272051	0.96[ASN][1000 genomes]
rs13275147	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13276168	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs16904267	0.85[AFR][1000 genomes]
rs16904268	0.86[EUR][1000 genomes]
rs1978551	0.80[CEU][hapmap]
rs2791349	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs28559741	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28562521	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28707621	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs28716119	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34003529	0.86[EUR][1000 genomes]
rs34019017	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34188408	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34334020	0.90[ASN][1000 genomes]
rs34542318	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34676374	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34737610	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34987314	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35123370	0.88[AFR][1000 genomes]
rs35229803	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35592532	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4526396	0.93[ASN][1000 genomes]
rs4574884	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs56677646	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6470819	0.83[EUR][1000 genomes]
rs6986119	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6986163	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6994854	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs7007359	0.93[ASN][1000 genomes]
rs7011509	0.94[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7016144	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7812299	0.84[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7812469	0.84[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7822048	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs7822957	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7823146	0.81[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7828824	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7832888	0.86[ASN][1000 genomes]
rs7838650	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131371600-131419800	Weak transcription	Aorta	Aorta
2	chr8:131374600-131409000	Weak transcription	Fetal Brain Female	brain
3	chr8:131383800-131409200	Weak transcription	Right Atrium	heart
4	chr8:131384800-131408800	Weak transcription	Brain Germinal Matrix	brain
5	chr8:131385800-131408600	Weak transcription	Fetal Brain Male	brain
6	chr8:131388800-131408400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:131389400-131409200	Weak transcription	Pancreas	Pancrea
8	chr8:131394200-131408800	Weak transcription	NH-A	brain
9	chr8:131395600-131434200	Weak transcription	Hela-S3	cervix
10	chr8:131396200-131408600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:131396800-131408400	Weak transcription	Fetal Heart	heart
12	chr8:131398200-131408400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr8:131398200-131413600	Weak transcription	Fetal Intestine Small	intestine
14	chr8:131398800-131408800	Weak transcription	Right Ventricle	heart
15	chr8:131398800-131417000	Weak transcription	Esophagus	oesophagus
16	chr8:131399200-131408800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:131399200-131408800	Weak transcription	Brain Anterior Caudate	brain
18	chr8:131399400-131408600	Weak transcription	Fetal Lung	lung
19	chr8:131399400-131409600	Weak transcription	HMEC	breast
20	chr8:131399400-131419600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr8:131401200-131408800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:131401600-131421800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:131402600-131418000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:131405200-131410000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:131405600-131408400	Weak transcription	Osteobl	bone
26	chr8:131405600-131408800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr8:131405600-131408800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr8:131405600-131409000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr8:131405600-131410800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr8:131405600-131412800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr8:131405600-131422800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr8:131405600-131423600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr8:131406400-131408800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr8:131406600-131408400	Weak transcription	Colon Smooth Muscle	Colon
35	chr8:131406800-131417000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:131407000-131408400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:131407000-131410200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr8:131407000-131414600	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr8:131407200-131409400	Enhancers	Ovary	ovary
40	chr8:131407200-131414400	Strong transcription	NHEK	skin
41	chr8:131407200-131414800	Strong transcription	A549	lung
42	chr8:131407400-131408600	Weak transcription	Fetal Kidney	kidney
43	chr8:131407400-131408600	Weak transcription	HSMM	muscle
44	chr8:131407400-131409600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr8:131407400-131413600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr8:131407400-131419600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr8:131407600-131408400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr8:131407600-131408800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr8:131407600-131409400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:131407600-131410000	Enhancers	HSMMtube	muscle

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