Variant report

Variant	rs10101655
Chromosome Location	chr8:66918473-66918474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10092425	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2357574	0.89[EUR][1000 genomes]
rs2357575	0.89[EUR][1000 genomes]
rs28408951	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28421753	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28532351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28589682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28860530	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57537433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6988654	0.87[EUR][1000 genomes]
rs7823492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66914600-66922200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:66914800-66922400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:66915200-66922200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:66915400-66920800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:66915400-66922200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:66915400-66922200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:66916400-66930600	Weak transcription	Thymus	Thymus
8	chr8:66916800-66923400	Enhancers	Primary B cells from peripheral blood	blood
9	chr8:66917000-66918600	Enhancers	Fetal Intestine Small	intestine
10	chr8:66917000-66919000	Enhancers	Fetal Intestine Large	intestine
11	chr8:66917200-66918600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr8:66918200-66918600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr8:66918200-66920600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr8:66918200-66921400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr8:66918400-66918600	Enhancers	Primary T cells from cord blood	blood
16	chr8:66918400-66919400	Enhancers	Primary B cells from cord blood	blood
17	chr8:66918400-66921200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr8:66918400-66921800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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