Variant report

Variant	rs28421753
Chromosome Location	chr8:66923234-66923235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66903801..66905636-chr8:66921446..66924226,2	MCF-7	breast:
2	chr8:66754690..66757292-chr8:66920792..66923655,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272192	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10092425	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10101655	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2357574	0.89[EUR][1000 genomes]
rs2357575	0.89[EUR][1000 genomes]
rs28408951	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28532351	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28589682	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28860530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57537433	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6988654	0.87[EUR][1000 genomes]
rs7823492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66916400-66930600	Weak transcription	Thymus	Thymus
2	chr8:66916800-66923400	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:66920200-66923400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:66920600-66923400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr8:66921600-66923400	Enhancers	A549	lung
6	chr8:66922400-66923400	Enhancers	Hela-S3	cervix
7	chr8:66922600-66923400	Enhancers	HMEC	breast
8	chr8:66922600-66927800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:66922800-66923400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr8:66922800-66926800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr8:66922800-66933000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:66923000-66923400	Enhancers	GM12878-XiMat	blood
13	chr8:66923000-66926200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr8:66923000-66927200	Weak transcription	Primary T cells from cord blood	blood
15	chr8:66923000-66927200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr8:66923000-66930600	Weak transcription	Fetal Thymus	thymus
17	chr8:66923200-66923600	Enhancers	Primary B cells from cord blood	blood
18	chr8:66923200-66926600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr8:66923200-66927000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr8:66923200-66931200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr8:66923200-66934400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr8:66923200-66934600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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