Variant report

Variant	rs2357574
Chromosome Location	chr8:66921251-66921252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66744581..66746108-chr8:66920937..66922823,2	MCF-7	breast:
2	chr8:66752167..66754287-chr8:66919773..66922247,2	MCF-7	breast:
3	chr8:66918473..66922547-chr8:66931459..66935939,5	MCF-7	breast:
4	chr8:66754690..66757292-chr8:66920792..66923655,2	MCF-7	breast:
5	chr8:66859588..66861651-chr8:66920158..66921660,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction
ENSG00000272192	Chromatin interaction
ENSG00000147570	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10092425	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10101655	0.89[EUR][1000 genomes]
rs16932411	0.84[YRI][hapmap]
rs2357575	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421753	0.89[EUR][1000 genomes]
rs28532351	0.89[EUR][1000 genomes]
rs28589682	0.89[EUR][1000 genomes]
rs28860530	0.89[EUR][1000 genomes]
rs4355757	0.88[YRI][hapmap]
rs57537433	0.89[EUR][1000 genomes]
rs7823492	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66914600-66922200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:66914800-66922400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:66915200-66922200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:66915400-66922200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr8:66915400-66922200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:66916400-66930600	Weak transcription	Thymus	Thymus
7	chr8:66916800-66923400	Enhancers	Primary B cells from peripheral blood	blood
8	chr8:66918200-66921400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr8:66918400-66921800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr8:66918600-66921400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr8:66918600-66922000	Weak transcription	Primary T cells from cord blood	blood
12	chr8:66918800-66922000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr8:66920200-66922000	Enhancers	Primary B cells from cord blood	blood
14	chr8:66920200-66922000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr8:66920200-66923400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr8:66920400-66921400	Weak transcription	Fetal Thymus	thymus
17	chr8:66920600-66923400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr8:66920800-66923200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr8:66921000-66921800	Enhancers	GM12878-XiMat	blood
20	chr8:66921200-66921600	Enhancers	Spleen	Spleen
21	chr8:66921200-66923000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr8:66921200-66923200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links