Variant report

Variant	rs10102487
Chromosome Location	chr8:68312818-68312819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68302794..68305096-chr8:68311126..68313387,2	MCF-7	breast:
2	chr8:68312439..68315164-chr8:68315835..68318294,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10089351	0.81[AFR][1000 genomes]
rs10091944	0.87[AMR][1000 genomes]
rs10099172	0.88[AFR][1000 genomes]
rs10103112	0.88[AFR][1000 genomes]
rs10156292	1.00[MEX][hapmap]
rs11984622	1.00[MEX][hapmap]
rs11989425	1.00[MEX][hapmap]
rs11994733	1.00[MEX][hapmap]
rs11998063	1.00[MEX][hapmap]
rs12114345	1.00[MEX][hapmap]
rs13439013	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1484605	1.00[MEX][hapmap]
rs16933285	0.80[AFR][1000 genomes]
rs16933287	0.84[AFR][1000 genomes]
rs16933306	1.00[MEX][hapmap]
rs28526142	1.00[AMR][1000 genomes]
rs28537350	0.83[AFR][1000 genomes]
rs28641561	1.00[AMR][1000 genomes]
rs28660544	1.00[AMR][1000 genomes]
rs28706574	0.83[AFR][1000 genomes]
rs28763309	0.81[AFR][1000 genomes]
rs28844108	0.81[AFR][1000 genomes]
rs55839780	0.81[AFR][1000 genomes]
rs56364242	1.00[AMR][1000 genomes]
rs7013505	1.00[MEX][hapmap]
rs73691344	0.81[AFR][1000 genomes]
rs73691345	0.81[AFR][1000 genomes]
rs73691346	0.81[AFR][1000 genomes]
rs73691347	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv518005	chr8:68312818-68319668	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68283400-68314000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:68307800-68313200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:68309600-68327200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:68311200-68313000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr8:68311600-68313200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr8:68311800-68314200	Enhancers	Thymus	Thymus
7	chr8:68312000-68314200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr8:68312200-68314400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr8:68312400-68313000	Enhancers	Primary T cells from cord blood	blood
10	chr8:68312400-68314200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr8:68312600-68313400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr8:68312600-68313600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr8:68312600-68314200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr8:68312600-68314200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr8:68312600-68314200	Enhancers	Fetal Thymus	thymus
16	chr8:68312600-68314400	Enhancers	Primary hematopoietic stem cells	blood
17	chr8:68312600-68314400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr8:68312600-68314400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:68312800-68313800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
20	chr8:68312800-68314400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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